Daniel Lim, MD, PhD

Title(s)Professor, Neurological Surgery
SchoolSchool of Medicine
Address35 Medical Center way, #1037
San Fancisco CA 94143
Phone415-476-8138
ORCID ORCID Icon0000-0001-7221-3425 Additional info
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    Other Positions
    Title(s)UCSF Weill Institute for Neurosciences


    Collapse Biography 
    Collapse Education and Training
    University of California, BerkeleyB.A.1994MCB
    Rockefeller UniversityPh.D.2001
    Cornell Medical SchoolM.D.2002
    University of California, San FranciscoResidency2008Neurological Surgery
    University of California, San Francisco, CA2021Diversity, Equity, and Inclusion Champion Training
    Collapse Awards and Honors
    National Institutes of Health2009  - 2014NIH Director's New Innovator Award
    Sontag Foundation2009  - 2013Distinguished Researcher Award
    U.S. National Academy of Sciences2010Kavli Fellow

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Functional long noncoding RNAs in neural development
    NIH R01NS124881Jul 1, 2022 - Jun 30, 2027
    Role: Principal Investigator
    A new model for understanding a brain tumor epigenetic driver
    NIH R21NS126978Mar 15, 2022 - Feb 29, 2024
    Role: Principal Investigator
    Understanding the neurodevelopmental role and mechanism of histone demethylase JMJD3
    NIH R01NS112357Jul 15, 2020 - Apr 30, 2025
    Role: Principal Investigator
    Chromatin-based regulation of neural stem cells
    VA I01BX000252Oct 1, 2009 - Sep 30, 2026
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications
    Collapse Collaboration Interests

    Collapse Featured Content 
    Collapse Twitter

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Deconstructing intratumoral heterogeneity through multiomic and multiscale analysis of serial sections. bioRxiv. 2024 Mar 18. Schupp PG, Shelton SJ, Brody DJ, Eliscu R, Johnson BE, Mazor T, Kelley KW, Potts MB, McDermott MW, Huang EJ, Lim DA, Pieper RO, Berger MS, Costello JF, Phillips JJ, Oldham MC. PMID: 37645893; PMCID: PMC10461981.
      View in: PubMed   Mentions:
    2. Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nat Commun. 2024 Jan 12; 15(1):476. Liu SJ, Casey-Clyde T, Cho NW, Swinderman J, Pekmezci M, Dougherty MC, Foster K, Chen WC, Villanueva-Meyer JE, Swaney DL, Vasudevan HN, Choudhury A, Pak J, Breshears JD, Lang UE, Eaton CD, Hiam-Galvez KJ, Stevenson E, Chen KH, Lien BV, Wu D, Braunstein SE, Sneed PK, Magill ST, Lim D, McDermott MW, Berger MS, Perry A, Krogan NJ, Hansen MR, Spitzer MH, Gilbert L, Theodosopoulos PV, Raleigh DR. PMID: 38216587; PMCID: PMC10786948.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    3. Sex-specific role for the long noncoding RNA Pnky in mouse behavior. bioRxiv. 2023 Dec 07. Saha P, Andersen RE, Hong SJ, Gil E, Simms J, Lim DA. PMID: 38105981; PMCID: PMC10723355.
      View in: PubMed   Mentions:
    4. A road map for the treatment of pediatric diffuse midline glioma. Cancer Cell. 2024 01 08; 42(1):1-5. Koschmann C, Al-Holou WN, Alonso MM, Anastas J, Bandopadhayay P, Barron T, Becher O, Cartaxo R, Castro MG, Chung C, Clausen M, Dang D, Doherty R, Duchatel R, Dun M, Filbin M, Franson A, Galban S, Garcia Moure M, Garton H, Gowda P, Marques JG, Hawkins C, Heath A, Hulleman E, Ji S, Jones C, Kilburn L, Kline C, Koldobskiy MA, Lim D, Lowenstein PR, Lu QR, Lum J, Mack S, Magge S, Marini B, Martin D, Marupudi N, Messinger D, Mody R, Morgan M, Mota M, Muraszko K, Mueller S, Natarajan SK, Nazarian J, Niculcea M, Nuechterlein N, Okada H, Opipari V, Pai MP, Pal S, Peterson E, Phoenix T, Prensner JR, Pun M, Raju GP, Reitman ZJ, Resnick A, Rogawski D, Saratsis A, Sbergio SG, Souweidane M, Stafford JM, Tzaridis T, Venkataraman S, Vittorio O, Wadden J, Wahl D, Wechsler-Reya RJ, Yadav VN, Zhang X, Zhang Q, Venneti S. PMID: 38039965.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    5. EPCO-12. IN VIVO PERTURB-SEQ DEFINES BIOLOGICAL DRIVERS AND THERAPEUTIC VULNERABILITIES UNDERLYING RADIOTHERAPY RESISTANCE IN GLIOBLASTOMA. Neuro-Oncology. 2023 Nov 10; 25(Supplement_5):v125-v126. Liu LJ, Pak PJ, Zou ZC, Pan PS, Payne PE, Foster FK, Lin LK, Casey-Clyde CT, Seo SK, O'Loughlin OT, Wu WD, Lim LD, Vasudevan VH, Diaz DA, Ozawa OT, Berger BM, de Groot dJ, Weiss WW, Gilbert GL, Raleigh RD. .
      View in: Publisher Site   Mentions:
    6. EPCO-39. CLARIFYING THE MOLECULAR CONSEQUENCES OF ONCOGENIC MUTATIONS THROUGH MULTISCALE AND MULTIOMIC ANALYSIS OF INDIVIDUAL TUMORS. Neuro-Oncology. 2023 Nov 10; 25(Supplement_5):v132-v133. Schupp SP, Shelton SS, Brody BD, Eliscu ER, Johnson JB, Mazor MT, Kelley KK, Potts PM, McDermott MM, Huang HE, Lim LD, Pieper PR, Berger BM, Costello CJ, Phillips PJ, Oldham OM. .
      View in: Publisher Site   Mentions:
    7. Identifying Gene-Treatment Interactions and Targetable Radiation Vulnerabilities in Glioblastoma through Coupling of In Vivo CRISPR Perturbation and Single Cell Transcriptomics. International Journal of Radiation Oncology • Biology • Physics. 2023 Oct 1; 117(2):s102. Liu LS, Pak PJ, Zou ZC, Payne PE, Foster FK, Vasudevan VH, Casey-Clyde CT, Seo SK, O'Loughlin OT, Wu WD, Lim LD, Ozawa OT, de Groot dJ, Berger BM, Weiss WW, Gilbert GL, Raleigh RD. .
      View in: Publisher Site   Mentions:
    8. 385 A Cell Resolution Atlas of the Human Cerebrovasculature Reveals Angiogenic and Inflammatory Cell Programs in Arteriovenous Malformations. Neurosurgery. 2023 Apr 1; 69(Supplement_1):69-69. Winkler WE, Kim KC, Ross RJ, Garcia GJ, Gil GE, Oh OI, Chen CL, Wu WD, Catapano CJ, Raygor RK, Narsinh NK, Kim KH, Weinsheimer WS, Cooke CD, Walcott WB, Lawton LM, Gupta GN, Zlokovic ZB, Chang CE, Abla AA, Lim LD, Nowakowski NT. .
      View in: Publisher Site   Mentions:
    9. TMIC-43. HEDGEHOG LIGANDS FROM GLIOBLASTOMA CELLS INDUCE ASTROCYTES INHIBITION OF CANCER STEM CELLS. Neuro-Oncology. 2022 Nov 14; 24(Supplement_7):vii280-vii281. Seo SK, Liu LS, Daggubati DV, Phillips PJ, Clarke CJ, Prados PM, Bhaduri BA, Lim LD, Ullian UE, Raleigh RD. .
      View in: Publisher Site   Mentions:
    10. Conserved and Distinct Functions of the Autism-Related Chromatin Remodeler CHD8 in Embryonic and Adult Forebrain Neurogenesis. J Neurosci. 2022 11 02; 42(44):8373-8392. Dong C, Zhao C, Chen X, Berry K, Wang J, Zhang F, Liao Y, Han R, Ogurek S, Xu L, Zhang L, Lin Y, Zhou W, Xin M, Lim DA, Campbell K, Nakafuku M, Waclaw RR, Lu QR. PMID: 36127134; PMCID: PMC9653284.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    11. Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells. Cell Genom. 2022 Nov 09; 2(11). Wu D, Poddar A, Ninou E, Hwang E, Cole MA, Liu SJ, Horlbeck MA, Chen J, Replogle JM, Carosso GA, Eng NWL, Chang J, Shen Y, Weissman JS, Lim DA. PMID: 36381608; PMCID: PMC9648144.
      View in: PubMed   Mentions: 6  
    12. A single-cell atlas of the normal and malformed human brain vasculature. Science. 2022 03 04; 375(6584):eabi7377. Winkler EA, Kim CN, Ross JM, Garcia JH, Gil E, Oh I, Chen LQ, Wu D, Catapano JS, Raygor K, Narsinh K, Kim H, Weinsheimer S, Cooke DL, Walcott BP, Lawton MT, Gupta N, Zlokovic BV, Chang EF, Abla AA, Lim DA, Nowakowski TJ. PMID: 35084939; PMCID: PMC8995178.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansCells
    13. Endoluminal Biopsy for Molecular Profiling of Human Brain Vascular Malformations. Neurology. 2022 04 19; 98(16):e1637-e1647. Winkler E, Wu D, Gil E, McCoy D, Narsinh K, Sun Z, Mueller K, Ross J, Kim H, Weinsheimer S, Berger M, Nowakowski T, Lim D, Abla A, Cooke D. PMID: 35145012; PMCID: PMC9052570.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    14. Single-cell analysis of the ventricular-subventricular zone reveals signatures of dorsal and ventral adult neurogenesis. Elife. 2021 07 14; 10. Cebrian-Silla A, Nascimento MA, Redmond SA, Mansky B, Wu D, Obernier K, Romero Rodriguez R, Gonzalez-Granero S, García-Verdugo JM, Lim DA, Álvarez-Buylla A. PMID: 34259628; PMCID: PMC8443251.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    15. Distinct nuclear compartment-associated genome architecture in the developing mammalian brain. Nat Neurosci. 2021 09; 24(9):1235-1242. Ahanger SH, Delgado RN, Gil E, Cole MA, Zhao J, Hong SJ, Kriegstein AR, Nowakowski TJ, Pollen AA, Lim DA. PMID: 34239128; PMCID: PMC8410652.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    16. Long noncoding RNAs in cancer metastasis. Nat Rev Cancer. 2021 07; 21(7):446-460. Liu SJ, Dang HX, Lim DA, Feng FY, Maher CA. PMID: 33953369; PMCID: PMC8288800.
      View in: PubMed   Mentions: 229     Fields:    Translation:HumansAnimals
    17. miRNA-independent function of long noncoding pri-miRNA loci. Proc Natl Acad Sci U S A. 2021 03 30; 118(13). He D, Wu D, Muller S, Wang L, Saha P, Ahanger SH, Liu SJ, Cui M, Hong SJ, Jain M, Olson HE, Akeson M, Costello JF, Diaz A, Lim DA. PMID: 33758101; PMCID: PMC8020771.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    18. CT and MRI Image Fusion Error: An Analysis of Co-Registration Error Using Commercially Available Deep Brain Stimulation Surgical Planning Software. Stereotact Funct Neurosurg. 2021; 99(3):196-202. Burke JF, Tanzillo D, Starr PA, Lim DA, Larson PS. PMID: 33535219.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    19. Genome-Scale Perturbation of Long Noncoding RNA Expression Using CRISPR Interference. Methods Mol Biol. 2021; 2254:323-338. Liu SJ, Horlbeck MA, Weissman JS, Lim DA. PMID: 33326085; PMCID: PMC7917014.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    20. Endoluminal Biopsy for Molecular Classification of Human Brain Arteriovenous Malformations. Neurosurgery. 2020 Dec 1; 67(Supplement_1). Winkler WE, Wu WD, Lim LD, Cooke CD, Abla AA. .
      View in: Publisher Site   Mentions:
    21. Multiplatform Genomic Profiling and Magnetic Resonance Imaging Identify Molecular and Radiologic Determinants of Intratumor Heterogeneity Underlying Aggressive Behavior in Meningioma. International Journal of Radiation Oncology • Biology • Physics. 2020 Nov 1; 108(3):s39-s40. Vasudevan VH, Magill MS, Seo SK, Villanueva-Meyer VJ, Choudhury CA, Liu LS, Pekmezci PM, Findakly FS, Hilz HS, LaStella LS, Braunstein BS, Oberheim ON, Aghi AM, Theodosopoulos TP, Sneed SP, Berger BM, McDermott MM, Lim LD, Ulian UE, Costello CJ, Raleigh RD. .
      View in: Publisher Site   Mentions:
    22. Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma. Nat Commun. 2020 09 23; 11(1):4803. Magill ST, Vasudevan HN, Seo K, Villanueva-Meyer JE, Choudhury A, John Liu S, Pekmezci M, Findakly S, Hilz S, Lastella S, Demaree B, Braunstein SE, Bush NAO, Aghi MK, Theodosopoulos PV, Sneed PK, Abate AR, Berger MS, McDermott MW, Lim DA, Ullian EM, Costello JF, Raleigh DR. PMID: 32968068; PMCID: PMC7511976.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    23. Maintenance of neural stem cell positional identity by mixed-lineage leukemia 1. Science. 2020 04 03; 368(6486):48-53. Delgado RN, Mansky B, Ahanger SH, Lu C, Andersen RE, Dou Y, Alvarez-Buylla A, Lim DA. PMID: 32241942; PMCID: PMC7871661.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    24. CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma. Genome Biol. 2020 03 31; 21(1):83. Liu SJ, Malatesta M, Lien BV, Saha P, Thombare SS, Hong SJ, Pedraza L, Koontz M, Seo K, Horlbeck MA, He D, Birk HS, Jain M, Olsen HE, Akeson M, Weissman JS, Monje M, Gupta N, Raleigh DR, Ullian EM, Lim DA. PMID: 32234056; PMCID: PMC7110660.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCells
    25. Prefrontal-Subthalamic Hyperdirect Pathway Modulates Movement Inhibition in Humans. Neuron. 2020 05 20; 106(4):579-588.e3. Chen W, de Hemptinne C, Miller AM, Leibbrand M, Little SJ, Lim DA, Larson PS, Starr PA. PMID: 32155442; PMCID: PMC7274135.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    26. Fitness effects of CRISPR/Cas9-targeting of long noncoding RNA genes. Nat Biotechnol. 2020 May; 38(5):573-576. Horlbeck MA, Liu SJ, Chang HY, Lim DA, Weissman JS. PMID: 32094656; PMCID: PMC8128075.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    27. Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. Cell Stem Cell. 2020 01 02; 26(1):48-63.e6. Bhaduri A, Di Lullo E, Jung D, Müller S, Crouch EE, Espinosa CS, Ozawa T, Alvarado B, Spatazza J, Cadwell CR, Wilkins G, Velmeshev D, Liu SJ, Malatesta M, Andrews MG, Mostajo-Radji MA, Huang EJ, Nowakowski TJ, Lim DA, Diaz A, Raleigh DR, Kriegstein AR. PMID: 31901251; PMCID: PMC7029801.
      View in: PubMed   Mentions: 129     Fields:    Translation:HumansCells
    28. Long-Term Safety, Immunologic Response, and Imaging Outcomes following Neural Stem Cell Transplantation for Pelizaeus-Merzbacher Disease. Stem Cell Reports. 2019 08 13; 13(2):254-261. Gupta N, Henry RG, Kang SM, Strober J, Lim DA, Ryan T, Perry R, Farrell J, Ulman M, Rajalingam R, Gage A, Huhn SL, Barkovich AJ, Rowitch DH. PMID: 31378671; PMCID: PMC6700500.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    29. The Long Noncoding RNA Pnky Is a Trans-acting Regulator of Cortical Development In Vivo. Dev Cell. 2019 05 20; 49(4):632-642.e7. Andersen RE, Hong SJ, Lim JJ, Cui M, Harpur BA, Hwang E, Delgado RN, Ramos AD, Liu SJ, Blencowe BJ, Lim DA. PMID: 31112699; PMCID: PMC6556063.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    30. Chapter 17 Stem Cell Transplantation for Neurological Disease: Technical Considerations and Delivery Devices. Nervous System Drug Delivery. 2019 Jan 1; 351-364. Winkler WE, Lim LD. .
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    31. Modulating the expression of long non-coding RNAs for functional studies. EMBO Rep. 2018 12; 19(12). Liu SJ, Lim DA. PMID: 30467236; PMCID: PMC6280642.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimals
    32. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. Bioinformatics. 2018 09 15; 34(18):3217-3219. Müller S, Cho A, Liu SJ, Lim DA, Diaz A. PMID: 29897414; PMCID: PMC7190654.
      View in: PubMed   Mentions: 43     Fields:    Translation:Humans
    33. Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element. Cell. 2018 05 31; 173(6):1398-1412.e22. Cho SW, Xu J, Sun R, Mumbach MR, Carter AC, Chen YG, Yost KE, Kim J, He J, Nevins SA, Chin SF, Caldas C, Liu SJ, Horlbeck MA, Lim DA, Weissman JS, Curtis C, Chang HY. PMID: 29731168; PMCID: PMC5984165.
      View in: PubMed   Mentions: 228     Fields:    Translation:HumansAnimalsCells
    34. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biol. 2017 Dec 20; 18(1):234. Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, Diaz A. PMID: 29262845; PMCID: PMC5738907.
      View in: PubMed   Mentions: 296     Fields:    Translation:HumansAnimalsCells
    35. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science. 2017 12 08; 358(6368):1318-1323. Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR. PMID: 29217575; PMCID: PMC5991609.
      View in: PubMed   Mentions: 384     Fields:    Translation:HumansCells
    36. Maintenance of Positional Identity of Neural Progenitors in the Embryonic and Postnatal Telencephalon. Front Mol Neurosci. 2017; 10:373. Delgado RN, Lim DA. PMID: 29180952; PMCID: PMC5693875.
      View in: PubMed   Mentions: 8  
    37. GENE-33. THE 3D EVOLUTION AND IN VIVO GROWTH PATTERNS OF GLIOMA CELL POPULATIONS. Neuro-Oncology. 2017 Nov 6; 19(suppl_6):vi99-vi99. Hilz HS, Shelton SS, Jalbert JL, Wong WH, Mazor MT, Hong HC, Hayes HJ, Luks LT, Bengtsson BH, Molinaro MA, McDermott MM, Berger BM, Lim LD, Diaz DA, Phillips PJ, Chang CS, Nelson NS, Oldham OM, Costello CJ. .
      View in: Publisher Site   Mentions:
    38. Forging our understanding of lncRNAs in the brain. Cell Tissue Res. 2018 01; 371(1):55-71. Andersen RE, Lim DA. PMID: 29079882.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    39. Unique Organization of the Nuclear Envelope in the Post-natal Quiescent Neural Stem Cells. Stem Cell Reports. 2017 07 11; 9(1):203-216. Cebrián-Silla A, Alfaro-Cervelló C, Herranz-Pérez V, Kaneko N, Park DH, Sawamoto K, Alvarez-Buylla A, Lim DA, García-Verdugo JM. PMID: 28648897; PMCID: PMC5511107.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    40. In Reply: Thalamotomy-Like Effects from Partial Removal of a Ventral Intermediate Nucleus Deep Brain Stimulator Lead in a Patient With Essential Tremor. Neurosurgery. 2017 05 01; 80(5):E256. Rolston JD, Lim DA. PMID: 28368504.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    41. Expert Opinion on the Management of Intracerebroventricular (ICV) Drug Delivery. Neuropediatrics. 2017 Apr 26; 48(S 01):s1-s45. Slavc SI, Cohen-Pfeffer CJ, Gururangan GS, Jurecki JE, Krauser KJ, Lester LT, Lim LD, Maldaun MM, Schwering SC, Shaywitz SA, Westphal WM. .
      View in: Publisher Site   Mentions:
    42. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science. 2017 01 06; 355(6320). Liu SJ, Horlbeck MA, Cho SW, Birk HS, Malatesta M, He D, Attenello FJ, Villalta JE, Cho MY, Chen Y, Mandegar MA, Olvera MP, Gilbert LA, Conklin BR, Chang HY, Weissman JS, Lim DA. PMID: 27980086; PMCID: PMC5394926.
      View in: PubMed   Mentions: 328     Fields:    Translation:HumansCells
    43. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Mol Syst Biol. 2016 Nov 25; 12(11):889. Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. PMID: 27888226; PMCID: PMC5147052.
      View in: PubMed   Mentions: 58     Fields:    Translation:Humans
    44. Maintenance of neural stem cell regional identity in culture. Neurogenesis (Austin). 2016; 3(1):e1187321. Delgado RN, Lu C, Lim DA. PMID: 27606338; PMCID: PMC4973606.
      View in: PubMed   Mentions: 5  
    45. The Adult Ventricular-Subventricular Zone (V-SVZ) and Olfactory Bulb (OB) Neurogenesis. Cold Spring Harb Perspect Biol. 2016 May 02; 8(5). Lim DA, Alvarez-Buylla A. PMID: 27048191; PMCID: PMC4852803.
      View in: PubMed   Mentions: 239     Fields:    Translation:HumansAnimalsCells
    46. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics. 2016 07 15; 32(14):2219-20. Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. PMID: 27153637; PMCID: PMC4937196.
      View in: PubMed   Mentions: 26     Fields:    
    47. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biol. 2016 Apr 14; 17:67. Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. PMID: 27081004; PMCID: PMC4831157.
      View in: PubMed   Mentions: 165     Fields:    Translation:HumansCells
    48. Merging DBS with viral vector or stem cell implantation: "hybrid" stereotactic surgery as an evolution in the surgical treatment of Parkinson's disease. Mol Ther Methods Clin Dev. 2016; 3:15051. Rowland NC, Kalia SK, Kalia LV, Larson PS, Lim DA, Bankiewicz KS. PMID: 26817024; PMCID: PMC4714520.
      View in: PubMed   Mentions: 4  
    49. Uncovering the roles of long noncoding RNAs in neural development and glioma progression. Neurosci Lett. 2016 06 20; 625:70-9. Ramos AD, Attenello FJ, Lim DA. PMID: 26733304; PMCID: PMC5094911.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    50. Thalamotomy-Like Effects From Partial Removal of a Ventral Intermediate Nucleus Deep Brain Stimulator Lead in a Patient With Essential Tremor: Case Report. Neurosurgery. 2015 Nov; 77(5):E831-6; discussion E836-7. Rolston JD, Ramos AD, Heath S, Englot DJ, Lim DA. PMID: 26200771; PMCID: PMC5267577.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    51. Molecular identity of human outer radial glia during cortical development. Cell. 2015 Sep 24; 163(1):55-67. Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. PMID: 26406371; PMCID: PMC4583716.
      View in: PubMed   Mentions: 372     Fields:    Translation:HumansAnimalsCells
    52. Embryonic Nkx2.1-expressing neural precursor cells contribute to the regional heterogeneity of adult V-SVZ neural stem cells. Dev Biol. 2015 Nov 15; 407(2):265-74. Delgado RN, Lim DA. PMID: 26387477; PMCID: PMC4663161.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    53. Transcriptional and epigenetic insights from stem cells and developing tissues. Development. 2015 Aug 01; 142(15):2549-53. Lim DA. PMID: 26243867.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    54. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 2015 Apr 02; 16(4):439-447. Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz C, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. PMID: 25800779; PMCID: PMC4388801.
      View in: PubMed   Mentions: 181     Fields:    Translation:HumansAnimalsCells
    55. Combining cell transplants or gene therapy with deep brain stimulation for Parkinson's disease. Mov Disord. 2015 Feb; 30(2):190-5. Rowland NC, Starr PA, Larson PS, Ostrem JL, Marks WJ, Lim DA. PMID: 25521796.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    56. Analysis of Mll1 deficiency identifies neurogenic transcriptional modules and Brn4 as a factor for direct astrocyte-to-neuron reprogramming. Neurosurgery. 2014 Oct; 75(4):472-82; discussion 482. Potts MB, Siu JJ, Price JD, Salinas RD, Cho MJ, Ramos AD, Hahn J, Margeta M, Oldham MC, Lim DA. PMID: 24887289; PMCID: PMC4420187.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    57. Adult neural stem cells stake their ground. Trends Neurosci. 2014 Oct; 37(10):563-71. Lim DA, Alvarez-Buylla A. PMID: 25223700; PMCID: PMC4203324.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    58. The Ink4a/Arf locus is a barrier to direct neuronal transdifferentiation. J Neurosci. 2014 Sep 10; 34(37):12560-7. Price JD, Park KY, Chen J, Salinas RD, Cho MJ, Kriegstein AR, Lim DA. PMID: 25209293; PMCID: PMC4160784.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    59. Activation of neuronal gene expression by the JMJD3 demethylase is required for postnatal and adult brain neurogenesis. Cell Rep. 2014 Sep 11; 8(5):1290-9. Park DH, Hong SJ, Salinas RD, Liu SJ, Sun SW, Sgualdino J, Testa G, Matzuk MM, Iwamori N, Lim DA. PMID: 25176653; PMCID: PMC4201382.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimalsCells
    60. Interventional magnetic resonance imaging-guided cell transplantation into the brain with radially branched deployment. Mol Ther. 2015 Jan; 23(1):119-29. Silvestrini MT, Yin D, Martin AJ, Coppes VG, Mann P, Larson PS, Starr PA, Zeng X, Gupta N, Panter SS, Desai TA, Lim DA. PMID: 25138755; PMCID: PMC4426791.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    61. An ingredient for the elixir of youth. Cell Res. 2014 Dec; 24(12):1381-2. Andersen RE, Lim DA. PMID: 25112712; PMCID: PMC4260342.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    62. Stem cell epigenetics: looking forward. Cell Stem Cell. 2014 Jun 05; 14(6):706-9. Benitah SA, Bracken A, Dou Y, Huangfu D, Ivanova N, Koseki H, Laurent L, Lim DA, Meshorer E, Pombo A, Sander M, Xu GL. PMID: 25032261.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    63. Distinct and separable roles for EZH2 in neurogenic astroglia. Elife. 2014 May 27; 3:e02439. Hwang WW, Salinas RD, Siu JJ, Kelley KW, Delgado RN, Paredes MF, Alvarez-Buylla A, Oldham MC, Lim DA. PMID: 24867641; PMCID: PMC4032491.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    64. A review of percutaneous treatments for trigeminal neuralgia. Neurosurgery. 2014 Mar; 10 Suppl 1:25-33; discussion 33. Cheng JS, Lim DA, Chang EF, Barbaro NM. PMID: 24509496.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimals
    65. Chromatin-based epigenetics of adult subventricular zone neural stem cells. Front Genet. 2013 Oct 08; 4:194. Gonzales-Roybal G, Lim DA. PMID: 24115953; PMCID: PMC3792351.
      View in: PubMed   Mentions: 15  
    66. A Review of Percutaneous Treatments for Trigeminal Neuralgia. Neurosurgery. 2013 Sep 23. Cheng JS, Lim DA, Chang EF, Barbaro NM. PMID: 24064481.
      View in: PubMed   Mentions:
    67. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Cell Stem Cell. 2013 May 02; 12(5):616-28. Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA. PMID: 23583100; PMCID: PMC3662805.
      View in: PubMed   Mentions: 145     Fields:    Translation:HumansAnimalsCells
    68. Devices for cell transplantation into the central nervous system: Design considerations and emerging technologies. Surg Neurol Int. 2013; 4(Suppl 1):S22-30. Potts MB, Silvestrini MT, Lim DA. PMID: 23653887; PMCID: PMC3642746.
      View in: PubMed   Mentions: 23  
    69. Radially branched deployment for more efficient cell transplantation at the scale of the human brain. Stereotact Funct Neurosurg. 2013; 91(2):92-103. Silvestrini MT, Yin D, Coppes VG, Mann P, Martin AJ, Larson PS, Starr PA, Gupta N, Panter SS, Desai TA, Lim DA. PMID: 23343609; PMCID: PMC3739996.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    70. Surrogate consent for critical care research: exploratory study on public perception and influences on recruitment. Crit Care. 2013 Jan 15; 17(1):R5. Lim DA, Chan MF, Childs C. PMID: 23320945; PMCID: PMC4057109.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    71. Neural stem cell engraftment and myelination in the human brain. Sci Transl Med. 2012 Oct 10; 4(155):155ra137. Gupta N, Henry RG, Strober J, Kang SM, Lim DA, Bucci M, Caverzasi E, Gaetano L, Mandelli ML, Ryan T, Perry R, Farrell J, Jeremy RJ, Ulman M, Huhn SL, Barkovich AJ, Rowitch DH. PMID: 23052294; PMCID: PMC3893824.
      View in: PubMed   Mentions: 131     Fields:    Translation:HumansCellsCTClinical Trials
    72. An old drug for new ideas: metformin promotes adult neurogenesis and spatial memory formation. Cell Stem Cell. 2012 Jul 06; 11(1):5-6. Potts MB, Lim DA. PMID: 22770236; PMCID: PMC3468946.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    73. Normalization, bias correction, and peak calling for ChIP-seq. Stat Appl Genet Mol Biol. 2012 Mar 31; 11(3):Article 9. Diaz A, Park K, Lim DA, Song JS. PMID: 22499706; PMCID: PMC3342857.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    74. Oscillations in sensorimotor cortex in movement disorders: an electrocorticography study. Brain. 2012 Feb; 135(Pt 2):615-30. Crowell AL, Ryapolova-Webb ES, Ostrem JL, Galifianakis NB, Shimamoto S, Lim DA, Starr PA. PMID: 22252995; PMCID: PMC3281473.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansCells
    75. Glial Nature of Adult Neural Stem Cells: Neurogenic Competence in Adult Astrocytes. Neural Development and Stem Cells. 2012 Jan 1; 149-172. Hwang HW, Alvarez-Buylla AA, Lim LD. .
      View in: Publisher Site   Mentions:
    76. Malignant Gliomas: Treatment Using Genetically-Modified Neural Stem Cells. . 2011 Dec 24; 225-234. Oh OM, Berger BM, Lim LD. .
      View in: Publisher Site   Mentions:
    77. Asymmetry-defective oligodendrocyte progenitors are glioma precursors. Cancer Cell. 2011 Sep 13; 20(3):328-40. Sugiarto S, Persson AI, Munoz EG, Waldhuber M, Lamagna C, Andor N, Hanecker P, Ayers-Ringler J, Phillips J, Siu J, Lim DA, Vandenberg S, Stallcup W, Berger MS, Bergers G, Weiss WA, Petritsch C. PMID: 21907924; PMCID: PMC3297490.
      View in: PubMed   Mentions: 120     Fields:    
    78. Keeping them quiet: BMPs maintain adult neural stem cell quiescence. Cell Stem Cell. 2010 Jul 02; 7(1):9-10. Johnston MA, Lim DA. PMID: 20621042.
      View in: PubMed   Mentions: 4     Fields:    
    79. Novel treatment strategies for malignant gliomas using neural stem cells. Neurotherapeutics. 2009 Jul; 6(3):458-64. Oh MC, Lim DA. PMID: 19560736; PMCID: PMC5084182.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    80. Future directions: use of interventional MRI for cell-based therapy of Parkinson disease. Neurosurg Clin N Am. 2009 Apr; 20(2):211-8. Roskom J, Swistowski A, Zeng X, Lim DA. PMID: 19555884.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    81. Intraoperative MRI in functional neurosurgery. Preface. Neurosurg Clin N Am. 2009 Apr; 20(2):xi. Lim DA, Larson PS. PMID: 19555874.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    82. Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells. Nature. 2009 Mar 26; 458(7237):529-33. Lim DA, Huang YC, Swigut T, Mirick AL, Garcia-Verdugo JM, Wysocka J, Ernst P, Alvarez-Buylla A. PMID: 19212323; PMCID: PMC3800116.
      View in: PubMed   Mentions: 196     Fields:    Translation:AnimalsCells
    83. Safety and feasibility of switching from phenytoin to levetiracetam monotherapy for glioma-related seizure control following craniotomy: a randomized phase II pilot study. J Neurooncol. 2009 Jul; 93(3):349-54. Lim DA, Tarapore P, Chang E, Burt M, Chakalian L, Barbaro N, Chang S, Lamborn KR, McDermott MW. PMID: 19169651; PMCID: PMC2687520.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCTClinical Trials
    84. miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. BMC Med. 2008 Jun 24; 6:14. Silber J, Lim DA, Petritsch C, Persson AI, Maunakea AK, Yu M, Vandenberg SR, Ginzinger DG, James CD, Costello JF, Bergers G, Weiss WA, Alvarez-Buylla A, Hodgson JG. PMID: 18577219; PMCID: PMC2443372.
      View in: PubMed   Mentions: 461     Fields:    Translation:HumansAnimalsCells
    85. Chapter 1 Structure and Function of the Brain and Spinal Cord. Essentials of Neuroanesthesia and Neurointensive Care. 2008 Jan 1; 3-12. Lim LD, Sughrue SM, McDermott MM. .
      View in: Publisher Site   Mentions:
    86. Lumbar Spine Coccidioidomycosis Osteomyelitis Requiring Lumbo-Pelvic Reconstruction. Neurosurgery Quarterly. 2007 Sep 1; 17(3):156-160. Lu LD, Lim LD, Chou CD. .
      View in: Publisher Site   Mentions:
    87. Relationship of glioblastoma multiforme to neural stem cell regions predicts invasive and multifocal tumor phenotype. Neuro Oncol. 2007 Oct; 9(4):424-9. Lim DA, Cha S, Mayo MC, Chen MH, Keles E, VandenBerg S, Berger MS. PMID: 17622647; PMCID: PMC1994099.
      View in: PubMed   Mentions: 214     Fields:    Translation:HumansCells
    88. Multiple target deep brain stimulation for multiple sclerosis related and poststroke Holmes' tremor. Stereotact Funct Neurosurg. 2007; 85(4):144-9. Lim DA, Khandhar SM, Heath S, Ostrem JL, Ringel N, Starr P. PMID: 17259750.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    89. The adult neural stem cell niche: lessons for future neural cell replacement strategies. Neurosurg Clin N Am. 2007 Jan; 18(1):81-92, ix. Lim DA, Huang YC, Alvarez-Buylla A. PMID: 17244556.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    90. In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis. Mol Cell Neurosci. 2006 Jan; 31(1):131-48. Lim DA, Suárez-Fariñas M, Naef F, Hacker CR, Menn B, Takebayashi H, Magnasco M, Patil N, Alvarez-Buylla A. PMID: 16330219.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    91. Sonic hedgehog controls stem cell behavior in the postnatal and adult brain. Development. 2005 Jan; 132(2):335-44. Palma V, Lim DA, Dahmane N, Sánchez P, Brionne TC, Herzberg CD, Gitton Y, Carleton A, Alvarez-Buylla A, Ruiz i Altaba A. PMID: 15604099; PMCID: PMC1431583.
      View in: PubMed   Mentions: 232     Fields:    Translation:AnimalsCells
    92. For the long run: maintaining germinal niches in the adult brain. Neuron. 2004 Mar 04; 41(5):683-6. Alvarez-Buylla A, Lim DA. PMID: 15003168.
      View in: PubMed   Mentions: 491     Fields:    Translation:HumansAnimalsCells
    93. Telomerase activity in the subventricular zone of adult mice. Mol Cell Neurosci. 2003 Aug; 23(4):693-702. Caporaso GL, Lim DA, Alvarez-Buylla A, Chao MV. PMID: 12932448.
      View in: PubMed   Mentions: 51     Fields:    Translation:AnimalsCells
    94. Postnatal development of radial glia and the ventricular zone (VZ): a continuum of the neural stem cell compartment. Cereb Cortex. 2003 Jun; 13(6):580-7. Tramontin AD, García-Verdugo JM, Lim DA, Alvarez-Buylla A. PMID: 12764031.
      View in: PubMed   Mentions: 124     Fields:    Translation:AnimalsCells
    95. DNA hybridization to mismatched templates: a chip study. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Apr; 65(4 Pt 1):040902. Naef F, Lim DA, Patil N, Magnasco M. PMID: 12005798.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    96. Investigating the use of primary adult subventricular zone neural precursor cells for neuronal replacement therapies. Brain Res Bull. 2002 Apr; 57(6):759-64. Lim DA, Flames N, Collado L, Herrera DG. PMID: 12031272.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    97. A Ca(2+) switch aligns the active site of calpain. Cell. 2002 Mar 08; 108(5):649-60. Moldoveanu T, Hosfield CM, Lim D, Elce JS, Jia Z, Davies PL. PMID: 11893336.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimalsCells
    98. Multipotent neural stem cells reside into the rostral extension and olfactory bulb of adult rodents. J Neurosci. 2002 Jan 15; 22(2):437-45. Gritti A, Bonfanti L, Doetsch F, Caille I, Alvarez-Buylla A, Lim DA, Galli R, Verdugo JM, Herrera DG, Vescovi AL. PMID: 11784788; PMCID: PMC6758684.
      View in: PubMed   Mentions: 122     Fields:    Translation:AnimalsCells
    99. Noggin antagonizes BMP signaling to create a niche for adult neurogenesis. Neuron. 2000 Dec; 28(3):713-26. Lim DA, Tramontin AD, Trevejo JM, Herrera DG, García-Verdugo JM, Alvarez-Buylla A. PMID: 11163261.
      View in: PubMed   Mentions: 361     Fields:    Translation:HumansAnimalsCells
    100. A relationship between behavior, neurotrophin expression, and new neuron survival. Proc Natl Acad Sci U S A. 2000 Jul 18; 97(15):8584-9. Li XC, Jarvis ED, Alvarez-Borda B, Lim DA, Nottebohm F. PMID: 10890902; PMCID: PMC26991.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansAnimalsCells
    101. Interaction between astrocytes and adult subventricular zone precursors stimulates neurogenesis. Proc Natl Acad Sci U S A. 1999 Jun 22; 96(13):7526-31. Lim DA, Alvarez-Buylla A. PMID: 10377448; PMCID: PMC22119.
      View in: PubMed   Mentions: 111     Fields:    Translation:HumansCells
    102. Subventricular zone astrocytes are neural stem cells in the adult mammalian brain. Cell. 1999 Jun 11; 97(6):703-16. Doetsch F, Caillé I, Lim DA, García-Verdugo JM, Alvarez-Buylla A. PMID: 10380923.
      View in: PubMed   Mentions: 1349     Fields:    Translation:AnimalsCells
    103. Condensation-free X-ray diffraction data collection with capillaries at 277 K. Journal of Applied Crystallography. 1999 Feb 1; 32(1):134-135. Lim LD, Ye YQ, Jia JZ. .
      View in: Publisher Site   Mentions:
    104. Architecture and cell types of the adult subventricular zone: in search of the stem cells. J Neurobiol. 1998 Aug; 36(2):234-48. García-Verdugo JM, Doetsch F, Wichterle H, Lim DA, Alvarez-Buylla A. PMID: 9712307.
      View in: PubMed   Mentions: 129     Fields:    Translation:AnimalsCells
    105. Competition for DNA binding sites between the short and long forms of E2 dimers underlies repression in bovine papillomavirus type 1 DNA replication control. J Virol. 1998 Mar; 72(3):1931-40. Lim DA, Gossen M, Lehman CW, Botchan MR. PMID: 9499046; PMCID: PMC109485.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    106. Postnatal mouse subventricular zone neuronal precursors can migrate and differentiate within multiple levels of the developing neuraxis. Proc Natl Acad Sci U S A. 1997 Dec 23; 94(26):14832-6. Lim DA, Fishell GJ, Alvarez-Buylla A. PMID: 9405699; PMCID: PMC25123.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    107. DNA-binding domain of bovine papillomavirus type 1 E1 helicase: structural and functional aspects. J Virol. 1993 Oct; 67(10):6000-14. Thorner LK, Lim DA, Botchan MR. PMID: 8396665; PMCID: PMC238021.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    108. The E1 protein of bovine papilloma virus 1 is an ATP-dependent DNA helicase. Proc Natl Acad Sci U S A. 1993 Jun 01; 90(11):5086-90. Yang L, Mohr I, Fouts E, Lim DA, Nohaile M, Botchan M. PMID: 8389467; PMCID: PMC46659.
      View in: PubMed   Mentions: 116     Fields:    Translation:Cells
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